Biological Properties and Genetic Characteristics of Collection and Epizootic Strains of Salmonella

References

1. Ashmarin, I.A. Vorobyov A.A. (1962). Statistical methods in microbiology. Leningrad. Medicine, 1962. 180 p.
2. Volozhantsev, N.V., et al. (1997). Obtaining vaccine strains of Salmonella using insertional mutagenesis. Veterinary. 9, 20-24.
3. Panin, A.N., et al. (2017). The problem of resistance to antibiotics of pathogens common to humans and animals. Veterinary medicine, zootechnics and biotechnology. 5, 18-24.
4. Panin, A.N., Kulikovskii, A.V., Davleev, A.D. (2010). Prevention of salmonellosis in the cultivation and processing of poultry. Available at: webpticeprom.ru.
5. Barrow, P. A., Lovell, M. A., Berchieri, A. (1991). The use of two live attenuated vaccines to immunize egg-laying hens against Salmonella enteritidis phage type 4. Avian Pathology. 20(4), 681-692.
6. Brettin, T., et al. (2015). RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. Scientific reports. 5, 8365.
7. Charles,,S. D., et al. (1994). Adjuvanted subunit vaccines for the control of Salmonella enteritidis infection in turkeys. American journal of veterinary research. 55(5), 636-642.
8. Ghosh, S. S. (1989). Comparative efficacy of four vaccines against Salmonella virchow in chicks in India. Research in Veterinary Science. 47(2), 280-282.
9. Gooderham, K. (1998). Biosecurity and vaccination in eradicating Salmonella enteritidis [chickens-United Kingdom]. Selezione Veterinaria (Italy). 8/9, 561-571.
10. Hasman, H. et al. (2014). Rapid whole-genome sequencing for detection and characterization of microorganisms directly from clinical samples. Journal of clinical microbiology. 52(1), 139-146.
11. Larsen, M. V. et al. (2012). Multilocus sequence typing of total-genome-sequenced bacteria. Journal of clinical microbiology. 50(4), 1355-1361.
12. Liu, B. et al. (2018). VFDB 2019: a comparative pathogenomic platform with an interactive web interface. Nucleic acids research. 47(D1), 687-692.
13. Identification of acquired antibiotic resistance genes. ResFinder. Available at: https://www.cge.cbs.dtu.dk/services/ResFinder.
14. NCBI's Bacterial Antimicrobial Resistance Reference Gene Database. Available at: https://www.ncbi.nlm.nih.gov/pathogens/antimicrobial-resistance/AMRFinder.
15. Magnet, S., Courvalin, P., Lambert, T. (1999). Activation of the cryptic aac (6?)-Iy aminoglycoside resistance gene of Salmonella by a chromosomal deletion generating a transcriptional fusion. Journal of Bacteriology. 181(21) 6650-6655.
16. Rapid Annotation using Subsystem Technology (RAST). Available at: http://wwww.rast.theseed.org/FIG/rast.cgi.
17. Roer L. et al. (2016). Is the evolution of Salmonella enterica subsp. enterica linked to restriction-modification systems?. Msystems. 1(3) e00009-16.
18. ABRicate program. Avalable at: https://github.com/tseemann/abricate
19. Chugunova, E. O., Tatarnikova, N. A. (2014). Salmonella genome (review). Modern problems of science and education. 6, 1828-1828.
20. The Virulence Factor DataBase (VFDB). Available at: http://www.mgc.ac.cn/cgi-bin/VFs/v5/main.cgi.
21. Semina, A. N., Novikova, O. B., Abgaryan, S. R. (2018). Study of the Salmonella genome for the specific determination of s. Enteridis, s. infantis and s. Typhimurium. Effective animal husbandry. 9(148), 6-6.
22. Kolmogorov, M. et al. (2014). Ragout - a reference-assisted assembly tool for bacterial genomes. Bioinformatics. 30(12), i302-i309.
23. World Health Organization. (1991). Control of Salmonellosis: Part Played by Veterinary Science and Nutrition Hygiene. 11-12 June 1991. Geneva, Switzerland: WHO/CDD/SER/91.14, 436-437.
24. Zankari, E. et al. (2012). Identification of acquired antimicrobial resistance genes. Journal of antimicrobial chemotherapy. 67(11) 2640-2644.